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HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 1 processed using the EVAL software package
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2W1Y PDB ENTRY 2W1Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4 294 2 uL protein/carboplatin/DMSO solution [20 mg (0.6 mM) HEWL + 1.4 mg (1.8 mM) carboplatin in 1 mL distilled water + 75 uL DMSO] + 2 uL reservoir solution [65% MPD, 0.1 M citric acid, pH 4.0] against 1 mL of reservoir solution, crystals grew after ~4 weeks, data collected 1 week after crystal growth, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.87 34.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.745 α = 90 b = 76.745 β = 90 c = 36.315 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD APEX II CCD 2013-03-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.19 81.6 0.34 9.2 26.1 7770 6342 4 0.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 99.8 2.71 0.9 12.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2W1Y 2.1 19.19 4 7770 6342 315 98.9 0.226 0.22577 0.22298 0.2295 0.28274 0.2796 RANDOM 26.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.05 -1.05 2.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.211 r_dihedral_angle_4_deg 14.65 r_dihedral_angle_3_deg 13.983 r_dihedral_angle_1_deg 6.862 r_long_range_B_refined 6.476 r_long_range_B_other 6.474 r_scangle_other 3.651 r_scbond_it 2.513 r_scbond_other 2.511 r_mcangle_it 2.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.211 r_dihedral_angle_4_deg 14.65 r_dihedral_angle_3_deg 13.983 r_dihedral_angle_1_deg 6.862 r_long_range_B_refined 6.476 r_long_range_B_other 6.474 r_scangle_other 3.651 r_scbond_it 2.513 r_scbond_other 2.511 r_mcangle_it 2.142 r_mcangle_other 2.142 r_angle_refined_deg 1.888 r_mcbond_it 1.375 r_mcbond_other 1.366 r_angle_other_deg 0.945 r_chiral_restr 0.099 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 37
Software Software Software Name Purpose APEX data collection PHASER phasing REFMAC refinement EVAL15 data reduction EVAL15 data scaling