☰ Navigation Tabs
Crystal structure of human FPPS in complex with CL03093
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F7M PDB ENTRY 2F7M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 295.15 17% PEG10000, 6.8% ethylene glycol, 15% glycerol, 0.085 M HEPES, microseeding (see primary citation for details), pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 295.15K
Crystal Properties Matthews coefficient Solvent content 2.76 55.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.12 α = 90 b = 111.12 β = 90 c = 77.19 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2013-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 55.06 98.4 0.055 22.3 9.4 21997 21643 52.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 99.1 0.411 4.8 9.5 1576
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 2F7M 2.3 55.06 20290 20290 1095 97.43 0.18558 0.18558 0.18343 0.1908 0.22587 0.2208 RANDOM 76.891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.03 -4.03 8.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.528 r_dihedral_angle_4_deg 17.908 r_dihedral_angle_3_deg 16.55 r_long_range_B_refined 8.275 r_long_range_B_other 8.274 r_scangle_other 5.882 r_dihedral_angle_1_deg 5.879 r_mcangle_it 4.535 r_mcangle_other 4.534 r_scbond_it 4.367
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.528 r_dihedral_angle_4_deg 17.908 r_dihedral_angle_3_deg 16.55 r_long_range_B_refined 8.275 r_long_range_B_other 8.274 r_scangle_other 5.882 r_dihedral_angle_1_deg 5.879 r_mcangle_it 4.535 r_mcangle_other 4.534 r_scbond_it 4.367 r_scbond_other 4.366 r_mcbond_it 3.091 r_mcbond_other 3.084 r_angle_refined_deg 1.795 r_angle_other_deg 0.888 r_chiral_restr 0.089 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2700 Nucleic Acid Atoms Solvent Atoms 50 Heterogen Atoms 27
Software Software Software Name Purpose MxDC data collection REFMAC refinement XDS data reduction XSCALE data scaling REFMAC phasing