☰ Navigation Tabs
ClpB NBD2 R621Q from T. thermophilus in complex with AMPPCP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LJ5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 0.1M Tris/HCl, 15% isopropanol, 75mM magnesium chloride, 2mM AMPPCP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.51 51.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.64 α = 90 b = 74.64 β = 90 c = 119.68 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2011-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.0000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 44 99.9 0.053 14.7 4.8 41388 41388 -3 -3 26.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.8 100 0.387 3.2 5 6484
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LJ5 1.7 43.91 39319 39319 2068 100 0.21002 0.21002 0.20828 0.2129 0.24439 0.2547 RANDOM 27.467
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 0.05 0.09 -0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.149 r_dihedral_angle_4_deg 15.574 r_dihedral_angle_3_deg 14.03 r_dihedral_angle_1_deg 4.914 r_scangle_it 3.341 r_scbond_it 1.914 r_angle_refined_deg 1.242 r_mcangle_it 1.069 r_mcbond_it 0.536 r_chiral_restr 0.085
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.149 r_dihedral_angle_4_deg 15.574 r_dihedral_angle_3_deg 14.03 r_dihedral_angle_1_deg 4.914 r_scangle_it 3.341 r_scbond_it 1.914 r_angle_refined_deg 1.242 r_mcangle_it 1.069 r_mcbond_it 0.536 r_chiral_restr 0.085 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2652 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 33
Software Software Software Name Purpose PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling