X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1YZQ 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.629318% (w/v) PEG3350, 0.1 M Li2SO4, 0.1 M MES. cryo solution (30% (w/v) PEG3350, 0.1 M Li2SO4, 0.1 M MES), pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
3.5865.63

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 81.645α = 90
b = 165.301β = 90
c = 166.404γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2009-05-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA1.0000SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.0519.999.121895216966.518.07

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1YZQ3.0519.9420544107699.20.265370.263570.29996RANDOM94.485
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
3.254.24-7.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.719
r_dihedral_angle_3_deg23.806
r_dihedral_angle_4_deg19.38
r_dihedral_angle_1_deg7.795
r_scangle_it4.408
r_angle_other_deg4.407
r_scbond_it2.711
r_mcangle_it2.666
r_mcbond_other2.093
r_angle_refined_deg1.688
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.719
r_dihedral_angle_3_deg23.806
r_dihedral_angle_4_deg19.38
r_dihedral_angle_1_deg7.795
r_scangle_it4.408
r_angle_other_deg4.407
r_scbond_it2.711
r_mcangle_it2.666
r_mcbond_other2.093
r_angle_refined_deg1.688
r_mcbond_it1.521
r_symmetry_hbond_refined0.505
r_symmetry_vdw_other0.318
r_symmetry_hbond_other0.316
r_nbd_refined0.271
r_nbd_other0.238
r_symmetry_vdw_refined0.21
r_nbtor_refined0.205
r_xyhbond_nbd_refined0.185
r_nbtor_other0.115
r_chiral_restr0.08
r_xyhbond_nbd_other0.019
r_bond_refined_d0.018
r_gen_planes_refined0.005
r_gen_planes_other0.005
r_bond_other_d
r_metal_ion_refined
r_metal_ion_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4735
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms15

Software

Software
Software NamePurpose
MOSFLMdata reduction
PHASESphasing
REFMACrefinement
XDSdata reduction
SCALEPACKdata scaling