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Structure of the Als3 adhesin from Candida albicans, residues 1-299 (mature sequence)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2Y7N PDB ENTRY 2Y7N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4 293.15 1.0 M lithium chloride, 0.1 M sodium citrate, pH 4.0, 20% w/v PEG6000, VAPOR DIFFUSION, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.4 48.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.63 α = 90 b = 30.89 β = 91.86 c = 143.19 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M mirrors 2011-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97630 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 71.56 95.5 0.095 8.4 3.5 55086 2 2 9.816
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.85 87.9 0.391 2.7 3.2 3666
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2Y7N 1.75 71.56 2 52182 2903 87.03 0.25843 0.2566 0.2683 0.29068 0.2934 RANDOM 20.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.7 -9.29 -28.09 23.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.845 r_dihedral_angle_4_deg 20.649 r_dihedral_angle_3_deg 14.844 r_dihedral_angle_1_deg 6.724 r_long_range_B_refined 6.196 r_long_range_B_other 6.069 r_angle_refined_deg 1.437 r_angle_other_deg 0.942 r_mcangle_it 0.3 r_mcangle_other 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.845 r_dihedral_angle_4_deg 20.649 r_dihedral_angle_3_deg 14.844 r_dihedral_angle_1_deg 6.724 r_long_range_B_refined 6.196 r_long_range_B_other 6.069 r_angle_refined_deg 1.437 r_angle_other_deg 0.942 r_mcangle_it 0.3 r_mcangle_other 0.3 r_scangle_other 0.226 r_mcbond_it 0.169 r_mcbond_other 0.169 r_scbond_it 0.133 r_scbond_other 0.133 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.004 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4501 Nucleic Acid Atoms Solvent Atoms 491 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement XDS data reduction SC data scaling