X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION4293.151.0 M lithium chloride, 0.1 M sodium citrate, pH 4.0, 20% w/v PEG6000, VAPOR DIFFUSION, temperature 293.15K
Crystal Properties
Matthews coefficientSolvent content
2.448.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.63α = 90
b = 30.89β = 91.86
c = 143.19γ = 90
Symmetry
Space GroupC 1 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6Mmirrors2011-12-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.97630DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7571.5695.50.0958.43.555086229.816
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8587.90.3912.73.23666

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2Y7N1.7571.56252182290387.030.258430.25660.29068RANDOM20.37
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.7-9.29-28.0923.39
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.845
r_dihedral_angle_4_deg20.649
r_dihedral_angle_3_deg14.844
r_dihedral_angle_1_deg6.724
r_long_range_B_refined6.196
r_long_range_B_other6.069
r_angle_refined_deg1.437
r_angle_other_deg0.942
r_mcangle_it0.3
r_mcangle_other0.3
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.845
r_dihedral_angle_4_deg20.649
r_dihedral_angle_3_deg14.844
r_dihedral_angle_1_deg6.724
r_long_range_B_refined6.196
r_long_range_B_other6.069
r_angle_refined_deg1.437
r_angle_other_deg0.942
r_mcangle_it0.3
r_mcangle_other0.3
r_scangle_other0.226
r_mcbond_it0.169
r_mcbond_other0.169
r_scbond_it0.133
r_scbond_other0.133
r_chiral_restr0.085
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_bond_other_d0.004
r_gen_planes_other0.004
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4501
Nucleic Acid Atoms
Solvent Atoms491
Heterogen Atoms

Software

Software
Software NamePurpose
MOLREPphasing
REFMACrefinement
XDSdata reduction
SCdata scaling