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Crystal Structure Analysis of FKBP52, Crystal Form II
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1C PDB ENTRY 1Q1C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 293 2 M ammonium sulfate, 0.1 M Bis-Tris, pH 6.5, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.6 52.65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.297 α = 90 b = 125.801 β = 92.01 c = 50.539 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9763 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 125.988 92.1 0.08 0.08 8.6 2.2 48008 48008 16.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.9 94.6 0.346 0.346 2 2.2 7175
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1Q1C 1.8 20 47991 47991 2448 91.92 0.1922 0.1922 0.1899 0.235 0.2714 RANDOM 18.4056
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.24 0.21 -1.69 0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.885 r_dihedral_angle_4_deg 15.368 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 6.342 r_scangle_it 3.038 r_scbond_it 1.798 r_angle_refined_deg 1.274 r_mcangle_it 1.008 r_mcbond_it 0.537 r_chiral_restr 0.086
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.885 r_dihedral_angle_4_deg 15.368 r_dihedral_angle_3_deg 13.124 r_dihedral_angle_1_deg 6.342 r_scangle_it 3.038 r_scbond_it 1.798 r_angle_refined_deg 1.274 r_mcangle_it 1.008 r_mcbond_it 0.537 r_chiral_restr 0.086 r_bond_refined_d 0.01 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3775 Nucleic Acid Atoms Solvent Atoms 575 Heterogen Atoms 20
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction