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Crystal structures of human p70S6K1-T389E
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A62
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 hanging drop 6.5 289 1.4M sodium citrate, 0.1M sodium cacodylate, pH 6.5, hanging drop, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.7 54.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.191 α = 90 b = 81.191 β = 90 c = 110.744 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CCD ADSC unsupported-q315 2011-10-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 0.9796 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 99.9 0.077 12.8 5.3 9796
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3A62 2.9 43.54 9753 507 99.83 0.235 0.2322 0.2537 0.2865 0.2539 RANDOM 76.6435
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.6 1.6 1.6 -5.19
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 49.967 r_dihedral_angle_2_deg 34.284 r_dihedral_angle_3_deg 18.413 r_dihedral_angle_4_deg 14.432 r_dihedral_angle_1_deg 5.506 r_rigid_bond_restr 1.925 r_angle_refined_deg 1.092 r_chiral_restr 0.074 r_bond_refined_d 0.005 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2528 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 28
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction