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Crystal structures of human p70S6K1 kinase domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3A62
Crystallization Crystal Properties Matthews coefficient Solvent content 2.82 56.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.511 α = 90 b = 70.511 β = 90 c = 150.484 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CCD ADSC unsupported-q315 2011-06-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRF BEAMLINE BL17U 1 SSRF BL17U
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 22617
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3A62 2.1 50 22302 1118 97.18 0.2125 0.2103 0.2111 0.2546 0.2127 RANDOM 47.2591
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.57 1.57 -3.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.485 r_dihedral_angle_4_deg 18.589 r_dihedral_angle_3_deg 16.572 r_scangle_it 7.093 r_dihedral_angle_1_deg 5.354 r_scbond_it 4.671 r_mcangle_it 4.177 r_rigid_bond_restr 3.49 r_mcbond_it 2.353 r_angle_refined_deg 1.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.485 r_dihedral_angle_4_deg 18.589 r_dihedral_angle_3_deg 16.572 r_scangle_it 7.093 r_dihedral_angle_1_deg 5.354 r_scbond_it 4.671 r_mcangle_it 4.177 r_rigid_bond_restr 3.49 r_mcbond_it 2.353 r_angle_refined_deg 1.333 r_chiral_restr 0.126 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2305 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 29
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DENZO data reduction SCALEPACK data scaling