☰ Navigation Tabs
Crystal Structure of the E113Q-MauG/pre-Methylamine Dehydrogenase Complex Aged 120 Days
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3L4M PDB entry 3L4M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.4 293 0.1M MES pH 6.4, 0.1M sodium acetate, 24-30% w/v PEG 8000, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.27 45.93
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.53 α = 109.94 b = 83.52 β = 91.54 c = 107.78 γ = 105.78
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD BIOMORPH MIRRORS (KIRKPATRICK-BAEZ CONFIGURATION) 2011-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.03320 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 50 97.8 0.061 13.36 2.2 110057 107618 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.09 96.3 0.358 2.32 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB entry 3L4M 2.05 29.62 103495 101166 5334 97.75 0.16044 0.16044 0.15779 0.165 0.21002 0.2173 RANDOM 37.576
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 0.55 -0.12 1.05 -0.34 -0.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 17.603 r_dihedral_angle_3_deg 15.067 r_dihedral_angle_1_deg 6.9 r_angle_refined_deg 1.958 r_angle_other_deg 0.899 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.224 r_dihedral_angle_4_deg 17.603 r_dihedral_angle_3_deg 15.067 r_dihedral_angle_1_deg 6.9 r_angle_refined_deg 1.958 r_angle_other_deg 0.899 r_chiral_restr 0.112 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_gen_planes_other 0.005 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13235 Nucleic Acid Atoms Solvent Atoms 1063 Heterogen Atoms 196
Software Software Software Name Purpose Blu-Ice data collection REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC phasing