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Crystal structure of human aminopeptidase A complexed with aspartate and calcium
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 1.6 M sodium citrate pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.38 63.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 142.093 α = 90 b = 142.093 β = 90 c = 237.414 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2012-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 54380
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 48.57 51631 2749 97.17 0.15532 0.1517 0.1561 0.22446 0.2238 RANDOM 64.608
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.17 -0.17 -0.17 0.54
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 75.057 r_sphericity_bonded 39.597 r_dihedral_angle_2_deg 37.247 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 17.122 r_dihedral_angle_1_deg 5.667 r_rigid_bond_restr 1.822 r_angle_refined_deg 1.177 r_chiral_restr 0.083 r_bond_refined_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 75.057 r_sphericity_bonded 39.597 r_dihedral_angle_2_deg 37.247 r_dihedral_angle_4_deg 23.304 r_dihedral_angle_3_deg 17.122 r_dihedral_angle_1_deg 5.667 r_rigid_bond_restr 1.822 r_angle_refined_deg 1.177 r_chiral_restr 0.083 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7144 Nucleic Acid Atoms Solvent Atoms 507 Heterogen Atoms 235
Software Software Software Name Purpose REFMAC refinement