☰ Navigation Tabs
Structure of EccB1 from the type VII (ESX-1) secretion system of Mycobacterium tuberculosis.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.4 295 0.1M TRIS-HCL PH 5.6, 15% PEG2000 MME, 0.01M NI CHLORIDE, vapor diffusion, sitting drop, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.32 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 31.7 α = 90 b = 110.63 β = 90 c = 110.51 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-04-15 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2012-04-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID 2 SYNCHROTRON APS BEAMLINE 22-ID 1.5 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.68 50 94.1 0.053 14.2 42744 -3 33.825
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.68 1.72 85.4 0.99 1.16
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.68 49.48 40651 2118 94.18 0.1786 0.1768 0.1868 0.214 0.2202 RANDOM 30.0072
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.14 -0.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.893 r_dihedral_angle_4_deg 16.114 r_dihedral_angle_3_deg 11.674 r_dihedral_angle_1_deg 5.46 r_mcangle_it 1.678 r_angle_refined_deg 1.347 r_mcbond_it 1.035 r_mcbond_other 1.035 r_angle_other_deg 0.758 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.893 r_dihedral_angle_4_deg 16.114 r_dihedral_angle_3_deg 11.674 r_dihedral_angle_1_deg 5.46 r_mcangle_it 1.678 r_angle_refined_deg 1.347 r_mcbond_it 1.035 r_mcbond_other 1.035 r_angle_other_deg 0.758 r_chiral_restr 0.075 r_bond_refined_d 0.009 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2870 Nucleic Acid Atoms Solvent Atoms 347 Heterogen Atoms 18
Software Software Software Name Purpose XSCALE data scaling SHARP phasing REFMAC refinement PDB_EXTRACT data extraction SERGUI data collection XDS data reduction