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Crystal structure of the Staphylococcus aureus protein (NP_646141.1, domain 3912-4037) similar to streptococcal adhesins emb and ebhA/ebhB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8 277 2.5M NACL, 0.1M IMIDAZOLE, 0.2M ZN(ACO)2, PH 8.00, VAPOR DIFFUSION, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 2.4 49.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.783 α = 90 b = 59.23 β = 90 c = 88.186 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 MIRRORS 2004-07-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.98011, 0.98031, 0.96487 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.7 0.053 55.027 18.3 18707 18652 -3 31
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.263 12.7 16.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 19.28 17632 17530 944 99.42 0.18767 0.18767 0.18542 0.1935 0.22986 0.2354 RANDOM 39.356
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.39 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.343 r_dihedral_angle_3_deg 14.171 r_dihedral_angle_4_deg 8.158 r_dihedral_angle_1_deg 4.559 r_angle_refined_deg 1.694 r_angle_other_deg 1.112 r_chiral_restr 0.092 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.005
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.343 r_dihedral_angle_3_deg 14.171 r_dihedral_angle_4_deg 8.158 r_dihedral_angle_1_deg 4.559 r_angle_refined_deg 1.694 r_angle_other_deg 1.112 r_chiral_restr 0.092 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.004 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1757 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 28
Software Software Software Name Purpose HKL-2000 data collection SHELXD phasing MLPHARE phasing SOLVE phasing RESOLVE model building REFMAC refinement Coot model building HKL-2000 data reduction HKL-2000 data scaling RESOLVE phasing