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Crystal structure of a bacterial immunoglobulin-like domain from the M. primoryensis ice-binding adhesin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 298 0.2M calcium acetate, 0.1 M sodium acetate and 30% (v/v) PEG, microbatch, temperature 298.0K , pH 4.5, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 1.59 22.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 28.69 α = 90 b = 43.02 β = 96.91 c = 32.26 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 IMAGE PLATE RIGAKU RAXIS IV++ MULTILAYER CONFOCAL 2012-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.42 25.7 91 0.079 15.36 3.8 5343 21.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.42 2.57 80.4 0.095 11.15
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.42 25.7 2999 2605 120 89.5 0.149 0.144 0.1539 0.234 0.2359 RANDOM 20.67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.6 1.3 1.72 -1.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.396 r_dihedral_angle_3_deg 13.699 r_dihedral_angle_1_deg 6.308 r_angle_refined_deg 1.54 r_angle_other_deg 0.757 r_chiral_restr 0.069 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.396 r_dihedral_angle_3_deg 13.699 r_dihedral_angle_1_deg 6.308 r_angle_refined_deg 1.54 r_angle_other_deg 0.757 r_chiral_restr 0.069 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 691 Nucleic Acid Atoms Solvent Atoms 66 Heterogen Atoms 5
Software Software Software Name Purpose StructureStudio data collection PHENIX model building REFMAC refinement MOSFLM data reduction SCALA data scaling PHENIX phasing