☰ Navigation Tabs
Crystal Structure of Staphylococcal Nuclease mutant I92V/V99L
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 25mM Sodium Phosphate, MPD 35-60%, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.29 46.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.2 α = 90 b = 47.2 β = 90 c = 63.4 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD RIGAKU SATURN 92 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 22.13 0.062 1.8 26865 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.65 0.702 0.6 1.03 1876
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 22.12 7625 399 97.88 0.20007 0.19755 0.2402 0.24705 0.2658 RANDOM 49.865
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.12 -0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.346 r_dihedral_angle_3_deg 21.262 r_dihedral_angle_4_deg 13.116 r_dihedral_angle_1_deg 7.526 r_scangle_it 6.231 r_scbond_it 4.013 r_mcangle_it 2.728 r_angle_refined_deg 2.263 r_mcbond_it 1.8 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.346 r_dihedral_angle_3_deg 21.262 r_dihedral_angle_4_deg 13.116 r_dihedral_angle_1_deg 7.526 r_scangle_it 6.231 r_scbond_it 4.013 r_mcangle_it 2.728 r_angle_refined_deg 2.263 r_mcbond_it 1.8 r_nbtor_refined 0.307 r_xyhbond_nbd_refined 0.23 r_nbd_refined 0.227 r_symmetry_hbond_refined 0.224 r_symmetry_vdw_refined 0.21 r_chiral_restr 0.177 r_bond_refined_d 0.026 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1082 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose CrystalClear data collection CCP4 model building REFMAC refinement d*TREK data reduction d*TREK data scaling CCP4 phasing