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Structure of Staphylococcus aureus MntC
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HH8 PDB ENTRY 3HH8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 290 Protein: 5.4 mg/ml, 150 mM sodium chloride, 25 mM tris hydrochloride, pH 8.0
Well: 34% Jeffamine ED-2001, 100 mM HEPES, pH 7.8 at 18C., VAPOR DIFFUSION, HANGING DROP, temperature 290K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 67.48 α = 90 b = 68.36 β = 90 c = 107.91 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2010-06-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 23 92.7 26334 24405 1.7 1.7 26.39
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.24 88.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3HH8 2.2 23 2 24405 20528 1039 79.03 0.199 0.1979 0.2044 0.2192 0.234 RANDOM 40.32
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.6809 7.3512 -16.032
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.89 t_omega_torsion 3.12 t_angle_deg 1.18 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 18.89 t_omega_torsion 3.12 t_angle_deg 1.18 t_bond_d 0.009 t_dihedral_angle_d t_incorr_chiral_ct t_pseud_angle t_trig_c_planes t_gen_planes t_it t_nbd t_improper_torsion t_chiral_improper_torsion t_sum_occupancies t_utility_distance t_utility_angle t_utility_torsion t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4248 Nucleic Acid Atoms Solvent Atoms 154 Heterogen Atoms 2
Software Software Software Name Purpose StructureStudio data collection PHASER phasing BUSTER refinement HKL-2000 data reduction HKL-2000 data scaling