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X-ray snapshots of possible intermediates in the time course of synthesis and degradation of protein-bound Fe4S4 clusters.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.15 42.82
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.641 α = 90 b = 78.762 β = 90 c = 86.088 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.976 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 60 99.1 0.053 117963 116913
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.54 96.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.45 58.12 58494 58494 3119 99.75 0.13451 0.13284 0.1319 0.16613 0.1631 RANDOM 13.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.33 -0.31 -1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.116 r_dihedral_angle_1_deg 18.333 r_dihedral_angle_4_deg 15.221 r_dihedral_angle_3_deg 11.787 r_sphericity_free 5.425 r_scangle_it 3.281 r_sphericity_bonded 2.781 r_scbond_it 2.457 r_mcangle_it 1.735 r_rigid_bond_restr 1.732
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.116 r_dihedral_angle_1_deg 18.333 r_dihedral_angle_4_deg 15.221 r_dihedral_angle_3_deg 11.787 r_sphericity_free 5.425 r_scangle_it 3.281 r_sphericity_bonded 2.781 r_scbond_it 2.457 r_mcangle_it 1.735 r_rigid_bond_restr 1.732 r_angle_refined_deg 1.723 r_angle_other_deg 1.432 r_mcbond_it 1.232 r_mcbond_other 0.501 r_symmetry_vdw_other 0.277 r_nbd_refined 0.265 r_nbd_other 0.209 r_symmetry_vdw_refined 0.191 r_xyhbond_nbd_refined 0.189 r_nbtor_refined 0.18 r_symmetry_hbond_refined 0.155 r_chiral_restr 0.11 r_nbtor_other 0.085 r_bond_refined_d 0.013 r_bond_other_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2729 Nucleic Acid Atoms Solvent Atoms 380 Heterogen Atoms 196
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling