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Complexe of ARNO Sec7 domain with the protein-protein interaction inhibitor N-(4-hydroxy-2,6-dimethylphenyl)benzenesulfonamide at pH7.5
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4JMI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 0.1M MGSO4, 18% PEG 5000 MME, 0.1M MES PH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.96 37.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.75 α = 90 b = 66.09 β = 90 c = 90.21 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2011-11-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.93340 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 30.78 96.4 13638 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4JMI 1.95 30.78 13638 730 96.42 0.1707 0.16607 0.1708 0.25555 0.261 RANDOM 21.483
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 0.13 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.322 r_sphericity_free 33.641 r_dihedral_angle_4_deg 23.839 r_dihedral_angle_3_deg 15.498 r_sphericity_bonded 9.883 r_rigid_bond_restr 4.956 r_dihedral_angle_1_deg 4.429 r_angle_refined_deg 1.605 r_angle_other_deg 0.934 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.322 r_sphericity_free 33.641 r_dihedral_angle_4_deg 23.839 r_dihedral_angle_3_deg 15.498 r_sphericity_bonded 9.883 r_rigid_bond_restr 4.956 r_dihedral_angle_1_deg 4.429 r_angle_refined_deg 1.605 r_angle_other_deg 0.934 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_gen_planes_other 0.006 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1572 Nucleic Acid Atoms Solvent Atoms 146 Heterogen Atoms 19
Software Software Software Name Purpose DNA data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling