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AKR1C2 complex with zomepirac
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other inhouse unliganded
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 20% PEG 3350, 0.2 M diammonium-L-tartrate, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.67 53.99
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.65 α = 90 b = 143.65 β = 90 c = 203.882 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 106.2 97.3 18.6 78969 78969 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 88.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse unliganded 1.75 19.84 74511 74511 3924 96.47 0.16553 0.16553 0.16243 0.174 0.22401 0.2241 RANDOM 34.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.42 0.42 0.42 -1.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.147 r_sphericity_free 23.609 r_sphericity_bonded 16.899 r_dihedral_angle_3_deg 13.872 r_dihedral_angle_4_deg 13.457 r_dihedral_angle_1_deg 6.14 r_rigid_bond_restr 5.091 r_angle_refined_deg 2.027 r_angle_other_deg 0.924 r_chiral_restr 0.194
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.147 r_sphericity_free 23.609 r_sphericity_bonded 16.899 r_dihedral_angle_3_deg 13.872 r_dihedral_angle_4_deg 13.457 r_dihedral_angle_1_deg 6.14 r_rigid_bond_restr 5.091 r_angle_refined_deg 2.027 r_angle_other_deg 0.924 r_chiral_restr 0.194 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5066 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 181
Software Software Software Name Purpose Blu-Ice data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling