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High resolution structure of a papaya barwin-like protein (crystal form 2)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 2M ammonium sulfate, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.12 42.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.908 α = 90 b = 56.964 β = 90 c = 74.202 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2011-12-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA 0.80 SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1 50 94.8 0.04 12.25 1.98 117408 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.11 92.8 0.582 1.94 1.86
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.05 39.53 119633 101997 5369 98.51 0.14393 0.14253 0.1428 0.17011 0.1701 RANDOM 13.857
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.03
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.735 r_dihedral_angle_2_deg 30.051 r_sphericity_bonded 22.494 r_dihedral_angle_4_deg 16.159 r_dihedral_angle_3_deg 9.621 r_rigid_bond_restr 8.436 r_dihedral_angle_1_deg 6.902 r_angle_refined_deg 2.041 r_angle_other_deg 1.103 r_chiral_restr 0.146
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 36.735 r_dihedral_angle_2_deg 30.051 r_sphericity_bonded 22.494 r_dihedral_angle_4_deg 16.159 r_dihedral_angle_3_deg 9.621 r_rigid_bond_restr 8.436 r_dihedral_angle_1_deg 6.902 r_angle_refined_deg 2.041 r_angle_other_deg 1.103 r_chiral_restr 0.146 r_bond_refined_d 0.023 r_gen_planes_refined 0.013 r_bond_other_d 0.009 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_mcangle_other r_scbond_it r_scbond_other r_scangle_it r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1923 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 6
Software Software Software Name Purpose XDS data scaling SHELXS phasing REFMAC refinement XDS data reduction