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Crystal structure of a DUF1343 family protein (BF0379) from Bacteroides fragilis NCTC 9343 at 1.30 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 1.0M lithium chloride, 20.0% polyethylene glycol 6000, 0.1M TRIS pH 8.0, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.87 34.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.655 α = 90 b = 47.702 β = 98.57 c = 59.732 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2012-10-17 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 29.686 97.7 0.089 7.5 3.6 75685 75685
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.33 83.7 0.491 0.491 1.5 3 4747
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 29.686 75638 3800 97.42 0.1206 0.1189 0.1487 0.151 0.1748 RANDOM 16.7691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.17 0.49 -0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.647 r_dihedral_angle_4_deg 22.622 r_dihedral_angle_3_deg 12.831 r_sphericity_free 10.113 r_dihedral_angle_1_deg 6.991 r_scangle_it 4.783 r_sphericity_bonded 4.395 r_scbond_it 3.396 r_mcangle_it 2.576 r_angle_refined_deg 1.755
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.647 r_dihedral_angle_4_deg 22.622 r_dihedral_angle_3_deg 12.831 r_sphericity_free 10.113 r_dihedral_angle_1_deg 6.991 r_scangle_it 4.783 r_sphericity_bonded 4.395 r_scbond_it 3.396 r_mcangle_it 2.576 r_angle_refined_deg 1.755 r_mcbond_it 1.723 r_rigid_bond_restr 1.657 r_angle_other_deg 1.037 r_mcbond_other 0.826 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.004 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2815 Nucleic Acid Atoms Solvent Atoms 327 Heterogen Atoms 31
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SHELX phasing SHARP phasing SCALA data scaling REFMAC refinement MOSFLM data reduction SHELXD phasing