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Crystal Structure of an Actin Dimer in Complex with the Actin Nucleator Cordon-Bleu
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 10% PEG3350, 0.18M NaCl, 0.1M PIPES, protein:mother liquor = 2:1, pH 7.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.68 54.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.45 α = 65.41 b = 99.8 β = 90.03 c = 118.27 γ = 77.77
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 195 CCD MARMOSAIC 225 mm CCD 2012-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 45.021 97.69 47394 46301 2 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.91 2.9705 96
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.91 45.02 47394 43972 2341 97.71 0.20317 0.20042 0.1995 0.25512 0.2546 RANDOM 66.709
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.28 1.11 -1.81 -0.33 -1.03 3.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.46 r_dihedral_angle_3_deg 16.503 r_dihedral_angle_4_deg 15.391 r_dihedral_angle_1_deg 5.471 r_angle_refined_deg 1.132 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.164
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.46 r_dihedral_angle_3_deg 16.503 r_dihedral_angle_4_deg 15.391 r_dihedral_angle_1_deg 5.471 r_angle_refined_deg 1.132 r_nbtor_refined 0.305 r_symmetry_vdw_refined 0.277 r_nbd_refined 0.215 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.164 r_chiral_restr 0.076 r_metal_ion_refined 0.027 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12716 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 128
Software Software Software Name Purpose REFMAC refinement PHENIX model building PHENIX refinement MOSFLM data reduction SCALA data scaling PHENIX phasing HKL-2000 data collection