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Structure of phage-related protein from Bacillus cereus ATCC 10987
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1 M MMT buffer, 25% PEG 1500, pH 7, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.83 32.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.532 α = 90 b = 51.476 β = 90 c = 73.345 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD MIRROR 2013-01-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97856 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 30 99.8 0.065 41.8 6.7 42130 42130 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.32 97.9 0.52 2.5 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 29.89 39942 39942 2127 99.77 0.12631 0.12434 0.1253 0.16349 0.1634 RANDOM 15.819
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.03 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.239 r_sphericity_free 35.811 r_dihedral_angle_4_deg 15.808 r_sphericity_bonded 11.395 r_dihedral_angle_3_deg 9.642 r_rigid_bond_restr 4.95 r_dihedral_angle_1_deg 4.949 r_scbond_it 4.116 r_mcangle_it 2.312 r_mcbond_it 1.998
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.239 r_sphericity_free 35.811 r_dihedral_angle_4_deg 15.808 r_sphericity_bonded 11.395 r_dihedral_angle_3_deg 9.642 r_rigid_bond_restr 4.95 r_dihedral_angle_1_deg 4.949 r_scbond_it 4.116 r_mcangle_it 2.312 r_mcbond_it 1.998 r_mcbond_other 1.982 r_angle_refined_deg 1.884 r_angle_other_deg 0.868 r_chiral_restr 0.13 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1412 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms
Software Software Software Name Purpose Blu-Ice data collection PHENIX model building REFMAC refinement XDS data reduction XDS data scaling PHENIX phasing