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High Affinity alpha24-beta17 T Cell Receptor for A2 HLA-Melanoma peptide complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 291 0.1 M sodium cacodylate, 20% PEG 8000, 0.2 M ammonium sulphate, pH 6.5, vapor diffusion, sitting drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.38 63.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.14 α = 90 b = 97.14 β = 90 c = 123.08 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD mirrors 2011-02-26 SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9778 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 49.67 100 0.192 0.192 16.6 10.9 26783 26783 52.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.46 100 0.025 2.542 0.2 11.5 1927
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 49.669 26751 26749 1346 100 0.2029 0.2005 0.1948 0.247 0.2404 RANDOM 44.6317
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1 0.5 1 -1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.62 r_dihedral_angle_4_deg 14.409 r_dihedral_angle_3_deg 10.859 r_scangle_it 4.381 r_dihedral_angle_1_deg 2.95 r_scbond_it 2.776 r_mcangle_it 1.849 r_angle_refined_deg 1.206 r_mcbond_it 0.956 r_angle_other_deg 0.683
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.62 r_dihedral_angle_4_deg 14.409 r_dihedral_angle_3_deg 10.859 r_scangle_it 4.381 r_dihedral_angle_1_deg 2.95 r_scbond_it 2.776 r_mcangle_it 1.849 r_angle_refined_deg 1.206 r_mcbond_it 0.956 r_angle_other_deg 0.683 r_mcbond_other 0.216 r_chiral_restr 0.073 r_bond_refined_d 0.022 r_gen_planes_refined 0.011 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3492 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 41
Software Software Software Name Purpose SCALA data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction GDA data collection xia2 data reduction