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SETD7 in complex with inhibitor PF-5426 and S-adenosyl-methionine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1O9S
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 25% PEG 3350, 0.1 M Ammonium Sulfate, 0.1 M BisTris pH6.5, vapor diffusion hanging drop, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.29 46.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.048 α = 90 b = 134.482 β = 90 c = 137.255 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD Marmosaic CCD300 2012-01-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 99.7 0.089 0.089 26.3 7.4 119046 21.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 99.4 0.635 7 5879
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1O9S 1.7 50 118841 1202 99.45 0.1988 0.1986 0.1981 0.2226 0.2277 RANDOM 24.8969
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.11 0.64 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.422 r_dihedral_angle_3_deg 11.947 r_dihedral_angle_4_deg 9.708 r_dihedral_angle_1_deg 5.551 r_scangle_it 2.657 r_scbond_it 1.598 r_mcangle_it 1.128 r_angle_refined_deg 1.108 r_mcbond_it 0.591 r_chiral_restr 0.072
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.422 r_dihedral_angle_3_deg 11.947 r_dihedral_angle_4_deg 9.708 r_dihedral_angle_1_deg 5.551 r_scangle_it 2.657 r_scbond_it 1.598 r_mcangle_it 1.128 r_angle_refined_deg 1.108 r_mcbond_it 0.591 r_chiral_restr 0.072 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7552 Nucleic Acid Atoms Solvent Atoms 953 Heterogen Atoms 273
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction MOLREP phasing Coot model building