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Thermus thermophilus DnaJ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 16% PEG6000, 0.1 M succinate/BTP, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.74 55.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.09 α = 90 b = 105 β = 90 c = 130.03 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD ADSC QUANTUM 4 2007-09-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.00767 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 20 99.2 34862 34862 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) R Split (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 0.561 2.7
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.9 20 29725 29726 1591 98.88 0.26697 0.26489 0.2589 0.30739 0.2991 RANDOM 95.697
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.35 1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.625 r_dihedral_angle_3_deg 17.816 r_dihedral_angle_4_deg 13.627 r_dihedral_angle_1_deg 4.147 r_scangle_it 0.973 r_angle_refined_deg 0.893 r_mcangle_it 0.701 r_scbond_it 0.615 r_mcbond_it 0.383 r_symmetry_vdw_other 0.315
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.625 r_dihedral_angle_3_deg 17.816 r_dihedral_angle_4_deg 13.627 r_dihedral_angle_1_deg 4.147 r_scangle_it 0.973 r_angle_refined_deg 0.893 r_mcangle_it 0.701 r_scbond_it 0.615 r_mcbond_it 0.383 r_symmetry_vdw_other 0.315 r_symmetry_hbond_refined 0.233 r_symmetry_vdw_refined 0.23 r_nbd_refined 0.217 r_nbd_other 0.204 r_nbtor_refined 0.185 r_xyhbond_nbd_refined 0.132 r_xyhbond_nbd_other 0.111 r_nbtor_other 0.085 r_chiral_restr 0.055 r_mcbond_other 0.043 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.001 r_bond_other_d r_angle_other_deg r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8460 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose ADSC data collection SHARP phasing REFMAC refinement XDS data reduction XSCALE data scaling