☰ Navigation Tabs
Crystal Structure of the Alpha1 dimer of Thermus thermophilus Transhydrogenase in P4(3)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1L7D PDB ENTRY 1L7D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 JCSG plus kit, condition A10: 0.2 M potassium formate, 20% w/v PEG3350, pH N.A., VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.3 62.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.794 α = 90 b = 85.794 β = 90 c = 146.659 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r Rh coated flat mirror 2011-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 0.97949 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 38.37 99.86 0.049 0.049 9.5 3.8 39298 39243 57.79
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 100 0.469 0.469 1.1 3.8 6432
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1L7D 2.4 38.37 39243 39243 2084 99.86 0.20507 0.20507 0.20235 0.1974 0.25712 0.2531 RANDOM 62.691
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 0.06 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.802 r_dihedral_angle_3_deg 21.383 r_dihedral_angle_4_deg 19.626 r_dihedral_angle_1_deg 6.346 r_scangle_it 4.207 r_scbond_it 2.453 r_mcangle_it 1.478 r_angle_refined_deg 1.473 r_mcbond_it 0.785 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.802 r_dihedral_angle_3_deg 21.383 r_dihedral_angle_4_deg 19.626 r_dihedral_angle_1_deg 6.346 r_scangle_it 4.207 r_scbond_it 2.453 r_mcangle_it 1.478 r_angle_refined_deg 1.473 r_mcbond_it 0.785 r_chiral_restr 0.118 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5484 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 42
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement XDS data reduction SCALA data scaling