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Halohydrin dehalogenase (HheC) bound to ethyl (2S)-oxiran-2-ylacetate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1PWZ PDB code 1PWZ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 293 12.5% (w/v) PEG 8000,0.2 M Magnesium Chloride, 0.1 M Tris-Cl pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.03 59.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.13 α = 90 b = 105.13 β = 90 c = 122.17 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9395 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.47 63.51 98.5 0.07 0.07 14 5.2 24644 2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB code 1PWZ 2.47 63.51 2 23346 23346 1242 98.07 0.267 0.21687 0.21396 0.2166 0.2738 0.2646 RANDOM 36.727
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 1.14 -2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.422 r_dihedral_angle_4_deg 21.525 r_dihedral_angle_3_deg 20.903 r_dihedral_angle_1_deg 8.082 r_scangle_it 4.635 r_scbond_it 2.906 r_mcangle_it 1.922 r_angle_refined_deg 1.239 r_mcbond_it 1.041 r_chiral_restr 0.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.422 r_dihedral_angle_4_deg 21.525 r_dihedral_angle_3_deg 20.903 r_dihedral_angle_1_deg 8.082 r_scangle_it 4.635 r_scbond_it 2.906 r_mcangle_it 1.922 r_angle_refined_deg 1.239 r_mcbond_it 1.041 r_chiral_restr 0.102 r_gen_planes_refined 0.012 r_bond_refined_d 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3856 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 20
Software Software Software Name Purpose ADSC data collection PHASER phasing REFMAC refinement MOSFLM data reduction SCALA data scaling