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Crystal structure of iron soaked (overnight) ferritin from Pseudo-nitzschia multiseries
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 pH 5.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 3 58.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 126.251 α = 90 b = 126.251 β = 90 c = 170.299 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 50 99.6 0.065 16.8 10.7 164004
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 100 0.507 6.4 16255
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.65 47.95 163306 8206 99.17 0.1772 0.1757 0.174 0.2046 0.2029 RANDOM 25.5402
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 0.11 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.15 r_dihedral_angle_4_deg 17.518 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_1_deg 5.121 r_scbond_it 4.529 r_mcangle_it 3.368 r_mcbond_it 2.522 r_angle_refined_deg 2.493 r_chiral_restr 0.189 r_bond_refined_d 0.028
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.15 r_dihedral_angle_4_deg 17.518 r_dihedral_angle_3_deg 14.213 r_dihedral_angle_1_deg 5.121 r_scbond_it 4.529 r_mcangle_it 3.368 r_mcbond_it 2.522 r_angle_refined_deg 2.493 r_chiral_restr 0.189 r_bond_refined_d 0.028 r_gen_planes_refined 0.014
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7533 Nucleic Acid Atoms Solvent Atoms 872 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction