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Crystal structure of iron soaked (5 min) ferritin from Pseudo-nitzschia multiseries
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 pH 5.5, VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.97 58.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.283 α = 90 b = 175.283 β = 90 c = 175.283 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 100 0.075 12.5 13 104263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 100 0.371 10.3 10384
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.1 42.55 103862 5181 99.62 0.1784 0.1759 0.1739 0.2253 0.2227 RANDOM 27.8725
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.69 r_dihedral_angle_4_deg 20.576 r_dihedral_angle_3_deg 14.882 r_dihedral_angle_1_deg 5.255 r_scbond_it 4.317 r_mcangle_it 3.437 r_mcbond_it 2.532 r_angle_refined_deg 1.894 r_chiral_restr 0.143 r_bond_refined_d 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.69 r_dihedral_angle_4_deg 20.576 r_dihedral_angle_3_deg 14.882 r_dihedral_angle_1_deg 5.255 r_scbond_it 4.317 r_mcangle_it 3.437 r_mcbond_it 2.532 r_angle_refined_deg 1.894 r_chiral_restr 0.143 r_bond_refined_d 0.02 r_gen_planes_refined 0.01
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10009 Nucleic Acid Atoms Solvent Atoms 821 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction