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Crystal structure of ferritin from Pseudo-nitzschia multiseries soaked with zinc
Crystallization Crystal Properties Matthews coefficient Solvent content 2.96 58.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 175.112 α = 90 b = 175.112 β = 90 c = 175.112 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315r
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 1 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99.9 0.086 14.2 14.7 120229
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 100 0.452 14.6 11937
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 42.51 117223 5893 97.52 0.1861 0.1837 0.1791 0.2315 0.2254 RANDOM 30.0452
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.068 r_dihedral_angle_4_deg 19.146 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 5.297 r_scbond_it 4.421 r_mcangle_it 3.612 r_mcbond_it 2.829 r_angle_refined_deg 1.94 r_chiral_restr 0.148 r_bond_refined_d 0.021
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.068 r_dihedral_angle_4_deg 19.146 r_dihedral_angle_3_deg 15.176 r_dihedral_angle_1_deg 5.297 r_scbond_it 4.421 r_mcangle_it 3.612 r_mcbond_it 2.829 r_angle_refined_deg 1.94 r_chiral_restr 0.148 r_bond_refined_d 0.021 r_gen_planes_refined 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10016 Nucleic Acid Atoms Solvent Atoms 912 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction