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Crystal structure of a putative neuraminidase (BACOVA_03493) from Bacteroides ovatus ATCC 8483 at 1.74 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.00M lithium chloride, 14.00% polyethylene glycol 6000, 0.1M MES pH 6.5, NANODROP', VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.24 44.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.457 α = 90 b = 48.051 β = 90 c = 88.599 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2012-10-17 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.918401,0.979493,0.979296 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.74 29.533 98.6 0.109 8.4 3.4 44640 44640 15.257
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.74 1.79 88.5 0.613 0.613 1.2 2.7 2920
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.74 29.533 44331 2241 97.87 0.1703 0.1685 0.1806 0.2047 0.211 RANDOM 16.823
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 -0.52 -0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.709 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_3_deg 12.057 r_dihedral_angle_1_deg 7.512 r_mcangle_it 2.156 r_angle_refined_deg 1.449 r_mcbond_it 1.398 r_mcbond_other 1.385 r_angle_other_deg 0.761 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.709 r_dihedral_angle_4_deg 15.844 r_dihedral_angle_3_deg 12.057 r_dihedral_angle_1_deg 7.512 r_mcangle_it 2.156 r_angle_refined_deg 1.449 r_mcbond_it 1.398 r_mcbond_other 1.385 r_angle_other_deg 0.761 r_chiral_restr 0.092 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3253 Nucleic Acid Atoms Solvent Atoms 410 Heterogen Atoms 27
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SOLVE phasing SCALA data scaling REFMAC refinement MOSFLM data reduction