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Crystal Structure of Pasteurella multocida N-Acetyl-D-Neuraminic acid lyase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 21% PEG1000, 0.15 M sodium chloride, 0.1 M sodium potassium phosphate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.69 54.36
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.946 α = 90 b = 113.471 β = 111.35 c = 82.238 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2008-01-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL7-1 0.97946 SSRL BL7-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 113.471 95.8 0.055 9.3 3.3 112841 112841 23.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.85 113.47 112840 112840 5681 95.77 0.1742 0.1724 0.2036 0.2089 0.2346 RANDOM 25.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.23 0.19 -0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.056 r_dihedral_angle_4_deg 17.111 r_dihedral_angle_3_deg 14.073 r_dihedral_angle_1_deg 6.002 r_scangle_it 3.355 r_scbond_it 2.036 r_angle_refined_deg 1.353 r_mcangle_it 1.083 r_mcbond_it 0.636 r_chiral_restr 0.101
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.056 r_dihedral_angle_4_deg 17.111 r_dihedral_angle_3_deg 14.073 r_dihedral_angle_1_deg 6.002 r_scangle_it 3.355 r_scbond_it 2.036 r_angle_refined_deg 1.353 r_mcangle_it 1.083 r_mcbond_it 0.636 r_chiral_restr 0.101 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9164 Nucleic Acid Atoms Solvent Atoms 1206 Heterogen Atoms 91
Software Software Software Name Purpose PHASER phasing REFMAC refinement PDB_EXTRACT data extraction Blu-Ice data collection MOSFLM data reduction SCALA data scaling