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The Phenylacetyl-CoA monooxygenase PaaABC subcomplex with phenylacetyl-CoA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3PW1 3PW1, chains A and C, 3EGR, chain A experimental model PDB 3EGR 3PW1, chains A and C, 3EGR, chain A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 100 mM MES pH 6.5, 12% 1-propanol, 10% PEG 5000MME, vapor diffusion, sitting drop, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.59 65.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.941 α = 90 b = 208.941 β = 90 c = 86.081 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77.2 CCD RAYONIX MX-300 2011-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 4.3 50 100 0.111 7.9 17.8 7908 223.33
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 4.3 4.37 99.7 9.7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT 3PW1, chains A and C, 3EGR, chain A 4.3 49.397 1.34 7895 364 99.33 0.2913 0.2884 0.2884 0.3627 0.3494 321.5123
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.649 f_angle_d 1.243 f_chiral_restr 0.086 f_bond_d 0.012 f_plane_restr 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4852 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 33
Software Software Software Name Purpose PHENIX refinement PHASER phasing REFMAC refinement PDB_EXTRACT data extraction XDS data scaling DENZO data reduction HKL-2000 data scaling SCALEPACK data scaling