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Crystal structure of kirola (Act d 11) - triclinic form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4IGV PDB ENTRY 4IGV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 293 0.1 M Bis-Tris, 0.2 M sodium chloride, 25% PEG3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.17 43.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.661 α = 76.7 b = 43.039 β = 85.67 c = 94.126 γ = 83.49
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2009-10-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9791 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 50 97.1 0.086 0.086 18.3 3.4 23741 23741 -3 46
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.35 2.39 84.8 0.34 0.34 2.3 3.1 1058
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 4IGV 2.35 50 22488 22488 1215 97.12 0.18695 0.18695 0.1839 0.2418 0.2447 RANDOM 77.003
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.24 -0.51 2.68 2.67 -3.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_4_deg 22.846 r_dihedral_angle_3_deg 16.47 r_dihedral_angle_1_deg 6.229 r_angle_other_deg 4.245 r_scangle_it 2.768 r_scbond_it 1.692 r_angle_refined_deg 1.409 r_mcangle_it 0.997 r_mcbond_it 0.522
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.572 r_dihedral_angle_4_deg 22.846 r_dihedral_angle_3_deg 16.47 r_dihedral_angle_1_deg 6.229 r_angle_other_deg 4.245 r_scangle_it 2.768 r_scbond_it 1.692 r_angle_refined_deg 1.409 r_mcangle_it 0.997 r_mcbond_it 0.522 r_chiral_restr 0.088 r_bond_refined_d 0.015 r_gen_planes_other 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4603 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 13
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 phasing MOLREP phasing REFMAC refinement HKL-3000 data reduction HKL-3000 data scaling