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Crystal structure of the N-terminal domain of the Streptococcus gordonii adhesin Sgo0707
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 291.15 20%(w/v) PEG4000, 0.1M sodium acetate, 0.2M ammonium sulphate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, temperature 291.15K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.131 α = 90 b = 158.115 β = 90 c = 164.265 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-11-30 M SINGLE WAVELENGTH 2 2 x-ray 100 CCD MARMOSAIC 225 mm CCD 2010-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979300 ESRF ID23-1 2 SYNCHROTRON ESRF BEAMLINE ID23-1 0.979300 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 48.45 98.4 114889 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.2 98.4
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 2.09 41.07 114889 112615 5640 96.5 0.181 0.179 0.1706 0.225 0.2149
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.9272 -2.1994 -0.7278
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.075 f_angle_d 1.103 f_chiral_restr 0.071 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13424 Nucleic Acid Atoms Solvent Atoms 1282 Heterogen Atoms 76
Software Software Software Name Purpose DNA data collection Auto-Rickshaw phasing PHENIX refinement XDS data reduction SCALA data scaling