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S.Aureus a-hemolysin monomer in complex with Fab
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 1.7M AmSO4, 4.25% isopropanol, 15% glycerol, pH 6, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.56 73.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 130.188 α = 90 b = 130.188 β = 90 c = 308.336 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-04-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.35 50 96.3 0.152 5.6 6.2 22137
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.35 3.47 91.3 0.554 6.3 2048
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3.36 30 22084 1149 96.19 0.2515 0.2491 0.2506 0.2964 0.2921 RANDOM 108.4352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.48 3.24 6.48 -9.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.211 r_dihedral_angle_4_deg 19.221 r_dihedral_angle_3_deg 17.531 r_dihedral_angle_1_deg 6.932 r_angle_refined_deg 1.156 r_angle_other_deg 0.789 r_scangle_it 0.606 r_scbond_it 0.391 r_mcangle_it 0.241 r_symmetry_vdw_other 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.211 r_dihedral_angle_4_deg 19.221 r_dihedral_angle_3_deg 17.531 r_dihedral_angle_1_deg 6.932 r_angle_refined_deg 1.156 r_angle_other_deg 0.789 r_scangle_it 0.606 r_scbond_it 0.391 r_mcangle_it 0.241 r_symmetry_vdw_other 0.238 r_symmetry_vdw_refined 0.218 r_symmetry_hbond_refined 0.211 r_nbd_refined 0.206 r_mcbond_it 0.189 r_nbd_other 0.186 r_nbtor_refined 0.181 r_xyhbond_nbd_refined 0.137 r_nbtor_other 0.084 r_chiral_restr 0.066 r_xyhbond_nbd_other 0.057 r_mcbond_other 0.024 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5559 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 25
Software Software Software Name Purpose SCALEPACK data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction BOS data collection DENZO data reduction