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Ubiquitin-like domain of human tubulin folding cofactor E - crystal form B
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 292 100 mM Bis Tris pH 6.5 and 43 % (v/v) PEG 400 and 10 mM praseodymium (III) acetate, VAPOR DIFFUSION, HANGING DROP, temperature 292K
Crystal Properties Matthews coefficient Solvent content 2.61 52.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.27 α = 90 b = 65.83 β = 90 c = 73.57 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2011-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 50 99.5 0.067 19.4 3.8 17.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.49 100 0.508 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.45 30 17586 17586 903 99.5 0.16318 0.16318 0.16187 0.2011 0.18882 0.2061 RANDOM 22.461
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.51 -0.25 -0.26
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.172 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 13.267 r_scangle_it 6.852 r_dihedral_angle_1_deg 5.808 r_scbond_it 4.418 r_mcangle_it 2.252 r_rigid_bond_restr 1.481 r_angle_refined_deg 1.324 r_mcbond_it 1.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.172 r_dihedral_angle_4_deg 18.042 r_dihedral_angle_3_deg 13.267 r_scangle_it 6.852 r_dihedral_angle_1_deg 5.808 r_scbond_it 4.418 r_mcangle_it 2.252 r_rigid_bond_restr 1.481 r_angle_refined_deg 1.324 r_mcbond_it 1.277 r_chiral_restr 0.083 r_bond_refined_d 0.009 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 682 Nucleic Acid Atoms Solvent Atoms 120 Heterogen Atoms 3
Software Software Software Name Purpose DNA data collection SHELXS phasing REFMAC refinement XDS data reduction SCALA data scaling