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Crystal structure of a putative flavoprotein (BACEGG_01620) from Bacteroides eggerthii DSM 20697 at 1.40 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 1.40M tri-Sodium Citrate, 0.1M sodium HEPES pH 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.8 56.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.625 α = 90 b = 85.625 β = 90 c = 58.134 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 KOHZU: Double Crystal Si(111) 2012-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.918401,0.979493,0.979199 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 29.067 98.4 0.085 9.2 3.9 40475 40475 12.318
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 99.5 0.689 0.689 2.2 3.9 2976
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.4 29.067 40456 2029 97.83 0.1163 0.1147 0.1291 0.1468 0.1579 RANDOM 17.776
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 -0.28 0.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.49 r_dihedral_angle_3_deg 10.655 r_dihedral_angle_4_deg 8.613 r_sphericity_free 7.658 r_scangle_it 6.033 r_dihedral_angle_1_deg 5.995 r_scbond_it 4.605 r_sphericity_bonded 4.23 r_mcangle_it 3.441 r_mcbond_it 2.419
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.49 r_dihedral_angle_3_deg 10.655 r_dihedral_angle_4_deg 8.613 r_sphericity_free 7.658 r_scangle_it 6.033 r_dihedral_angle_1_deg 5.995 r_scbond_it 4.605 r_sphericity_bonded 4.23 r_mcangle_it 3.441 r_mcbond_it 2.419 r_rigid_bond_restr 1.906 r_angle_refined_deg 1.622 r_mcbond_other 1.603 r_angle_other_deg 1.027 r_chiral_restr 0.083 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1214 Nucleic Acid Atoms Solvent Atoms 255 Heterogen Atoms 64
Software Software Software Name Purpose MolProbity model building PDB_EXTRACT data extraction SOLVE phasing SCALA data scaling REFMAC refinement MOSFLM data reduction