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Crystal structure of Sir2 C543S mutant in complex with SID domain of Sir4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 289 100mM sodium phosphate, 0.6M sodium citrate, 2mM DTT, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 3.07 59.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 166.406 α = 90 b = 178.752 β = 90 c = 121.564 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4r 2008-04-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4r M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A 1.08 NSLS X29A 2 SYNCHROTRON NSLS BEAMLINE X29A 0.9790, 0.9794, 0.9600 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 50 90.2 0.088 15.8 5.7 40373 36438 2 2 74.36
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3 76.7 0.405 1.9 3.4
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD 2.901 36.431 1.34 40373 36243 1811 89.66 0.2288 0.2267 0.2686 0.2828 79.2548
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.4627 -21.1136 30.4414
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.528 f_angle_d 0.999 f_chiral_restr 0.079 f_bond_d 0.005 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8470 Nucleic Acid Atoms Solvent Atoms 110 Heterogen Atoms 74
Software Software Software Name Purpose ADSC data collection SHARP phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling