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Crystal structure of Aspartyl phosphate phosphatase F from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 294 1.2M ammonium sulphate, 0.5M lithium chloride, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.03 59.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.21 α = 90 b = 97.21 β = 90 c = 203.155 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-05-26 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 315r M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.931 ESRF ID14-4 2 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9790, 0.9791, 0.9074 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.249 101.535 99.7 0.093 0.085 12.7 5.3 53512 53443 1 1 47
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.25 2.36 98.1 0.74 0.644 2.4 4.1 7543
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 84.21 42011 42011 2231 99.88 0.20361 0.20361 0.20158 0.1924 0.23999 0.2305 RANDOM 47.562
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.92 -0.46 -0.92 1.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.737 r_dihedral_angle_4_deg 22.72 r_dihedral_angle_3_deg 18.905 r_dihedral_angle_1_deg 7.79 r_scangle_it 4.148 r_scbond_it 2.784 r_mcangle_it 1.966 r_angle_refined_deg 1.793 r_mcbond_it 1.201 r_nbtor_refined 0.314
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.737 r_dihedral_angle_4_deg 22.72 r_dihedral_angle_3_deg 18.905 r_dihedral_angle_1_deg 7.79 r_scangle_it 4.148 r_scbond_it 2.784 r_mcangle_it 1.966 r_angle_refined_deg 1.793 r_mcbond_it 1.201 r_nbtor_refined 0.314 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.225 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.14 r_symmetry_hbond_refined 0.104 r_bond_refined_d 0.019 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6441 Nucleic Acid Atoms Solvent Atoms 306 Heterogen Atoms 46
Software Software Software Name Purpose DNA data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling