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Structure of the BSK8 kinase domain (SeMet labeled)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 15-25%(w/v) PEG3350, 200mM KSCN, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.86 33.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.898 α = 90 b = 77.552 β = 105.67 c = 68.147 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MAR CCD 165 mm Si(111) monochromator, Dynamically bendable mirror 2008-11-29 M MAD 2 1 3 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.979670 SLS X10SA 2 SYNCHROTRON SLS BEAMLINE X10SA 0.979160 SLS X10SA 3 SYNCHROTRON SLS BEAMLINE X10SA 0.971490 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 35 98.05 0.049 19.2 4.23 81558 79966 -3 21.682
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.6 97 0.268 0.25 6.58
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.5 33.39 80493 78964 1000 98.1 0.1807 0.1804 0.1896 0.2078 0.2195 RANDOM 18.394
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 0.18 0.11 0.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.716 r_dihedral_angle_4_deg 19.236 r_dihedral_angle_3_deg 12.237 r_dihedral_angle_1_deg 5.514 r_angle_refined_deg 1.504 r_angle_other_deg 0.813 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.716 r_dihedral_angle_4_deg 19.236 r_dihedral_angle_3_deg 12.237 r_dihedral_angle_1_deg 5.514 r_angle_refined_deg 1.504 r_angle_other_deg 0.813 r_chiral_restr 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4557 Nucleic Acid Atoms Solvent Atoms 414 Heterogen Atoms
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data scaling XDS data reduction PHENIX phasing