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Crystal structure of wild type HIV-1 protease in complex with non-peptidic inhibitor, GRL007
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 1.6 M ammonium sulfate (precipitant) in 0.1 M BICINE buffer, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.12 42.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.13 α = 90 b = 62.13 β = 90 c = 82.3 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-225 2012-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.978 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 32.69 0.11 12128
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.96 29.06 11341 584 91.96 0.19513 0.19319 0.1928 0.23283 0.232 RANDOM 24.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.01 -0.03 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.257 r_dihedral_angle_4_deg 27.738 r_dihedral_angle_3_deg 19.531 r_dihedral_angle_1_deg 6.569 r_scangle_it 6.128 r_scbond_it 4.655 r_rigid_bond_restr 4.39 r_mcangle_it 2.912 r_mcbond_it 1.938 r_angle_refined_deg 1.691
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.257 r_dihedral_angle_4_deg 27.738 r_dihedral_angle_3_deg 19.531 r_dihedral_angle_1_deg 6.569 r_scangle_it 6.128 r_scbond_it 4.655 r_rigid_bond_restr 4.39 r_mcangle_it 2.912 r_mcbond_it 1.938 r_angle_refined_deg 1.691 r_chiral_restr 0.105 r_bond_refined_d 0.012 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1516 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 40
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling