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Dihydrodipicolinate Synthase of Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 293 0.1 M Tris pH 8.5, 2 M ammonium sulphate, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.86 68.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.75 α = 90 b = 131.74 β = 90 c = 162.63 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 102.37 98.4 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.55 102.37 273971 14616 98.4 0.19 0.189 0.1948 0.204 0.2059 RANDOM 22.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 0.83 -0.47
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.191 r_dihedral_angle_3_deg 10.866 r_dihedral_angle_4_deg 9.201 r_dihedral_angle_1_deg 5.195 r_scangle_it 1.914 r_scbond_it 1.113 r_angle_refined_deg 1.089 r_mcangle_it 0.663 r_mcbond_it 0.348 r_chiral_restr 0.075
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.191 r_dihedral_angle_3_deg 10.866 r_dihedral_angle_4_deg 9.201 r_dihedral_angle_1_deg 5.195 r_scangle_it 1.914 r_scbond_it 1.113 r_angle_refined_deg 1.089 r_mcangle_it 0.663 r_mcbond_it 0.348 r_chiral_restr 0.075 r_bond_refined_d 0.006 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8785 Nucleic Acid Atoms Solvent Atoms 1439 Heterogen Atoms 48
Software Software Software Name Purpose REFMAC refinement