☰ Navigation Tabs
Crystal structure of rabbit ryanodine receptor 1 (residues 1-536) disease mutant L14R
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2XOA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 pH 8.0, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 7.14 82.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.402 α = 90 b = 171.402 β = 90 c = 300.477 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2010-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 49.48 100 22.7 37869 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.9 3.06 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2XOA 2.9 46.7 35972 1894 99.99 0.2301 0.22885 0.2278 0.24869 0.2262 RANDOM 94.874
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.65 1.32 2.65 -3.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.021 r_dihedral_angle_4_deg 20.01 r_dihedral_angle_3_deg 17.654 r_dihedral_angle_1_deg 5.137 r_scangle_it 1.026 r_angle_refined_deg 1.013 r_mcangle_it 0.838 r_scbond_it 0.584 r_mcbond_it 0.467 r_chiral_restr 0.067
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.021 r_dihedral_angle_4_deg 20.01 r_dihedral_angle_3_deg 17.654 r_dihedral_angle_1_deg 5.137 r_scangle_it 1.026 r_angle_refined_deg 1.013 r_mcangle_it 0.838 r_scbond_it 0.584 r_mcbond_it 0.467 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3521 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms 6
Software Software Software Name Purpose MxDC data collection PHASER phasing REFMAC refinement SCALA data scaling