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Crystal structure of rabbit ryanodine receptor 1 (residues 1-536) disease mutant I404M
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X0A
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 8 pH 8.0, EVAPORATION
Crystal Properties Matthews coefficient Solvent content 7.11 82.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 171.374 α = 90 b = 171.374 β = 90 c = 299.429 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARMOSAIC 300 mm CCD 2010-09-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 46.6 100 0.097 7.6 58584 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2X0A 2.5 44.89 55655 2929 99.99 0.2321 0.23296 0.2321 0.2348 0.24911 0.2523 RANDOM 65.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.73 -0.36 -0.73 1.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.302 r_dihedral_angle_3_deg 17.342 r_dihedral_angle_4_deg 16.926 r_dihedral_angle_1_deg 5.079 r_angle_refined_deg 0.942 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.302 r_dihedral_angle_3_deg 17.342 r_dihedral_angle_4_deg 16.926 r_dihedral_angle_1_deg 5.079 r_angle_refined_deg 0.942 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3598 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 6
Software Software Software Name Purpose MxDC data collection PHASER phasing REFMAC refinement SCALA data scaling