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Structure of MNTR mutant E11K complexed with Mn2+
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2F5D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 22% ETHYLENE GLYCOL, 55 MM LITHIUM SULFATE, 2 MM MANGANESE CHLORIDE, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.427 α = 90 b = 46.081 β = 92.96 c = 74.892 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2007-08-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1159 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 74.79 98.8 0.052 22.2 3.56 40214
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.74 97.4 0.36 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2F5D 1.65 30.33 38181 2021 98.71 0.23534 0.23377 0.2394 0.26444 0.2686 RANDOM 31.787
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.38 -2.67 -3.14 -2.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.776 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 9.786 r_dihedral_angle_1_deg 4.72 r_scangle_it 2.956 r_scbond_it 1.924 r_angle_refined_deg 1.12 r_mcangle_it 1.044 r_mcbond_it 0.733 r_angle_other_deg 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 26.776 r_dihedral_angle_3_deg 13.59 r_dihedral_angle_4_deg 9.786 r_dihedral_angle_1_deg 4.72 r_scangle_it 2.956 r_scbond_it 1.924 r_angle_refined_deg 1.12 r_mcangle_it 1.044 r_mcbond_it 0.733 r_angle_other_deg 0.72 r_nbtor_refined 0.299 r_symmetry_hbond_refined 0.238 r_symmetry_vdw_refined 0.151 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.063 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2098 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 2
Software Software Software Name Purpose MOLREP phasing REFMAC refinement MOSFLM data reduction SCALA data scaling