☰ Navigation Tabs
Hepatitus C envelope glycoprotein E2 fragment 412-423 with humanized and affinity-matured antibody MRCT10.v362
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FVC
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 291 LiCl, PEG6000, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.22 44.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.091 α = 90 b = 90.821 β = 109.35 c = 72.681 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARMOSAIC 300 mm CCD 2011-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 99.9 0.052 23 3.8 131070 -3 21
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FVC 1.53 50 130923 129605 1318 99.9 0.175 0.175 0.1858 0.2 0.209 RANDOM 24.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.32 0.1 0.06 -0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.269 r_dihedral_angle_4_deg 19.747 r_dihedral_angle_3_deg 12.506 r_dihedral_angle_1_deg 6.843 r_scangle_it 5.405 r_mcangle_it 3.919 r_scbond_it 3.76 r_mcbond_it 2.523 r_angle_refined_deg 1.232 r_angle_other_deg 0.919
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.269 r_dihedral_angle_4_deg 19.747 r_dihedral_angle_3_deg 12.506 r_dihedral_angle_1_deg 6.843 r_scangle_it 5.405 r_mcangle_it 3.919 r_scbond_it 3.76 r_mcbond_it 2.523 r_angle_refined_deg 1.232 r_angle_other_deg 0.919 r_mcbond_other 0.587 r_chiral_restr 0.074 r_bond_refined_d 0.008 r_bond_other_d 0.006 r_gen_planes_refined 0.005 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6784 Nucleic Acid Atoms Solvent Atoms 1059 Heterogen Atoms
Software Software Software Name Purpose PHASER phasing REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling