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crystal structure of F403A mutant of S. aureus Pyruvate carboxylase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 294 200 mM ammonium tartrate and 20% (w/v) PEG3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 2.8 56.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.23 α = 90 b = 256.283 β = 109.86 c = 126.685 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2010-06-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X29A NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 30 91 0.092 11.7 2.8 128744 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.9 94.4 0.465 2.1 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.8 30 141000 122029 6458 91 0.212 0.209 0.2068 0.279 0.2733 RANDOM 84.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.14 1.74 0.71 -0.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.967 r_dihedral_angle_3_deg 23.284 r_dihedral_angle_4_deg 21.655 r_dihedral_angle_1_deg 8.553 r_scangle_it 4.831 r_scbond_it 2.969 r_mcangle_it 1.769 r_angle_refined_deg 1.359 r_mcbond_it 0.941 r_chiral_restr 0.105
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.967 r_dihedral_angle_3_deg 23.284 r_dihedral_angle_4_deg 21.655 r_dihedral_angle_1_deg 8.553 r_scangle_it 4.831 r_scbond_it 2.969 r_mcangle_it 1.769 r_angle_refined_deg 1.359 r_mcbond_it 0.941 r_chiral_restr 0.105 r_bond_refined_d 0.013 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 32373 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 107
Software Software Software Name Purpose REFMAC refinement CNS refinement CBASS data collection DENZO data reduction SCALEPACK data scaling CNS phasing