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Crystal structure of mutant rabbit PRP 121-230 (S170N)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O79 PDB ENTRY 3O79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 100mM SODIUM CACODYLATE PH 6.5, 3.0M NACL, 30% GLYCEROL, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.81 32.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.52 α = 90 b = 86.08 β = 90 c = 86.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2008-07-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9793 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 60 97.3 0.059 0.051 24.29 7.7 39174 39174
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.5 73.2 0.538 3.6 2798
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3O79 1.45 43.51 39174 37203 1971 97.9 0.14733 0.14555 0.1466 0.18017 0.1805 RANDOM 18.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.56 0.72
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.086 r_sphericity_free 18.864 r_dihedral_angle_3_deg 15.15 r_dihedral_angle_4_deg 11.498 r_sphericity_bonded 11.042 r_rigid_bond_restr 9.044 r_dihedral_angle_1_deg 6.674 r_angle_refined_deg 1.731 r_angle_other_deg 1.524 r_chiral_restr 0.103
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.086 r_sphericity_free 18.864 r_dihedral_angle_3_deg 15.15 r_dihedral_angle_4_deg 11.498 r_sphericity_bonded 11.042 r_rigid_bond_restr 9.044 r_dihedral_angle_1_deg 6.674 r_angle_refined_deg 1.731 r_angle_other_deg 1.524 r_chiral_restr 0.103 r_gen_planes_refined 0.021 r_gen_planes_other 0.018 r_bond_refined_d 0.016 r_bond_other_d 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_it r_mcbond_other r_mcangle_it r_scbond_it r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1686 Nucleic Acid Atoms Solvent Atoms 181 Heterogen Atoms 26
Software Software Software Name Purpose HKL-2000 data collection PHASER phasing REFMAC refinement XDS data reduction XSCALE data scaling