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Crystal structure of the Pseudomonas aeruginosa azurin, H124NO YOH122
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293.15 26-34% PEG 4000, 100 mM Lithium Nitrate, 6.25 mM Copper Sulfate and 100 mM Imidazole, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293.15K
Crystal Properties Matthews coefficient Solvent content 2.11 41.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.669 α = 90 b = 65.637 β = 90 c = 72.561 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M K-B focusing mirrors 2012-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 1.00 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.58 35 99.5 39079 39126 15.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 35 39126 824 98.42 0.22698 0.22405 0.2233 0.28097 0.2801 RANDOM 28.711
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 0.09 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.308 r_dihedral_angle_3_deg 18.537 r_dihedral_angle_1_deg 7.568 r_dihedral_angle_4_deg 5.745 r_scangle_it 4.315 r_scbond_it 2.929 r_mcangle_it 1.984 r_angle_refined_deg 1.913 r_mcbond_it 1.217 r_chiral_restr 0.123
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.308 r_dihedral_angle_3_deg 18.537 r_dihedral_angle_1_deg 7.568 r_dihedral_angle_4_deg 5.745 r_scangle_it 4.315 r_scbond_it 2.929 r_mcangle_it 1.984 r_angle_refined_deg 1.913 r_mcbond_it 1.217 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1942 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 2
Software Software Software Name Purpose Blu-Ice data collection MOLREP phasing REFMAC refinement autoXDS data reduction SCALA data scaling